Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs112056394 chr4:70049680 A/C 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs112150630 chr7:29708556 CCT/C 3.55E-13 119 37.63 48.18 6 KM Plot
THYM rs112158882 chr7:76138796 C/CAA 0.000249 119 40.67 45.87 28.43 KM Plot
THYM rs112165062 chr7:29687592 C/T 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs112174534 chr21:44060199 G/C 0.000117 116 41.22 31.07 28.43 KM Plot
THYM rs11217583 chr11:119801338 A/G 1.21E-8 119 12.63 50.13 38.83 KM Plot
THYM rs11217584 chr11:119802832 A/G 1.28E-8 119 12.63 49.77 39.75 KM Plot
THYM rs112195166 chr9:97249607 G/A 7.08E-5 119 39.75 45.87 17.03 KM Plot
THYM rs112197495 chr1:227465660 C/G 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs11220185 chr11:125565219 G/A 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs112214507 chr20:29513259 C/G 3.19E-13 117 38.33 50.1 6 KM Plot
THYM rs112243782 chr5:34852446 G/A 0.000129 116 41.22 42.9 28.43 KM Plot
THYM rs112268455 chr19:35899217 G/C 2.76E-8 114 38.83 44.38 12.63 KM Plot
THYM rs112431560 chr21:44064958 C/A 0.000133 116 39.75 42.9 28.43 KM Plot
THYM rs112440207 chr3:52982643 A/AATT 0.000205 118 42.73 23.8 25.63 KM Plot